| Pos | Team | PL | GD | PTS |
|---|---|---|---|---|
| CFL , Group A | ||||
| 1 |  Kladno | 16 | +40 | 41 |
| 2 |  Jiskra Domažlice | 16 | +13 | 34 |
| 3 |  Viktoria Plzeň II | 16 | +11 | 33 |
| 4 |  Písek | 16 | +6 | 30 |
| 5 |  Slavia III | 16 | +12 | 28 |
| 6 |  Admira Praha | 16 | +3 | 27 |
| 7 |  Loko Vltavín | 16 | 0 | 24 |
| 8 |  Dukla Praha II | 16 | +3 | 23 |
| 9 |  Králův Dvůr | 16 | -6 | 21 |
| 10 |  Sokol Hostouň | 16 | -7 | 21 |
| 11 |  Příbram II | 16 | -4 | 19 |
| 12 |  České Budějovice II | 16 | -6 | 19 |
| 13 |  Aritma Praha | 16 | -5 | 18 |
| 14 |  Bohemians 1905 II | 16 | -4 | 17 |
| 15 |  Petřín Plzeň | 16 | -14 | 14 |
| 16 |  Motorlet Praha | 16 | -17 | 10 |
| 17 |  Táborsko II | 16 | -25 | 7 |
| CFL , Group B | ||||
| 1 |  Arsenal Česká Lípa | 16 | +26 | 45 |
| 2 |  Sokol Zápy | 16 | +24 | 40 |
| 3 |  Hradec Králové II | 16 | +20 | 35 |
| 4 |  Teplice II | 15 | +12 | 30 |
| 5 |  Baník Souš | 15 | +8 | 30 |
| 6 |  Jablonec II | 16 | -1 | 28 |
| 7 |  Pardubice II | 16 | +7 | 22 |
| 8 |  Velké Hamry | 15 | +2 | 20 |
| 9 |  Benátky nad Jizerou | 15 | -1 | 19 |
| 10 |  Neratovice-Byškovice | 15 | -7 | 18 |
| 11 |  Mladá Boleslav II | 16 | -10 | 16 |
| 12 |  Ústí nad Orlicí | 16 | -7 | 15 |
| 13 |  Slovan Liberec II | 15 | -2 | 14 |
| 14 |  Kolín | 16 | -8 | 14 |
| 15 |  Sokol Brozany | 14 | -15 | 8 |
| 16 |  Slovan Velvary | 16 | -18 | 8 |
| 17 |  Varnsdorf | 16 | -30 | 7 |