| Pos | Team | PL | GD | PTS |
|---|---|---|---|---|
| Challenge League | ||||
| 1 |  Balzan FC | 15 | +27 | 35 |
| 2 |  Melita | 15 | +19 | 32 |
| 3 |  Birzebbuga | 15 | +14 | 31 |
| 4 |  Sirens | 15 | +20 | 29 |
| 5 |  Swieqi United | 15 | +9 | 29 |
| 6 |  Fgura United | 15 | +9 | 25 |
| 7 |  Pietà Hotspurs | 15 | +6 | 24 |
| 8 |  St. Andrews | 15 | -4 | 23 |
| 9 |  Mgarr United | 15 | +4 | 22 |
| 10 |  Gudja United | 15 | +3 | 22 |
| 11 |  Santa Lucía | 15 | +2 | 18 |
| 12 |  Zurrieq | 15 | -6 | 14 |
| 13 |  Vittoriosa Stars | 15 | -7 | 12 |
| 14 |  Marsa | 15 | -10 | 8 |
| 15 |  Zebbug Rangers | 15 | -28 | 8 |
| 16 |  Mtarfa | 15 | -58 | -2 |
| Challenge League , Promotion Round | ||||
| 1 | Balzan FC | 16 | +24 | 35 |
| 2 | Melita | 16 | +21 | 35 |
| 3 | Birzebbuga | 16 | +16 | 34 |
| 4 | Swieqi United | 16 | +11 | 32 |
| 5 | Sirens | 16 | +18 | 29 |
| 6 | St. Andrews | 16 | -1 | 26 |
| 7 | Fgura United | 16 | +7 | 25 |
| 8 | Pietà Hotspurs | 16 | +4 | 24 |
| Challenge League , Relegation Round | ||||
| 1 | Mgarr United | 16 | +9 | 25 |
| 2 | Gudja United | 16 | 0 | 22 |
| 3 | Santa Lucía | 16 | +2 | 19 |
| 4 | Zurrieq | 16 | -3 | 17 |
| 5 | Vittoriosa Stars | 16 | -7 | 13 |
| 6 | Marsa | 16 | -10 | 9 |
| 7 | Zebbug Rangers | 16 | -28 | 9 |
| 8 | Mtarfa | 16 | -63 | -2 |