| Pos | Team | PL | GD | PTS |
|---|---|---|---|---|
| Regionalliga Bayern | ||||
| 1 |  Nürnberg II | 19 | +19 | 46 |
| 2 |  SpVgg Unterhaching | 19 | +26 | 39 |
| 3 |  Würzburger Kickers | 19 | +18 | 39 |
| 4 |  Illertissen | 20 | +14 | 37 |
| 5 |  Eichstätt | 18 | +13 | 32 |
| 6 |  Bayern München II | 20 | +9 | 30 |
| 7 |  Aubstadt | 18 | +2 | 30 |
| 8 |  Wacker Burghausen | 18 | +5 | 28 |
| 9 |  Vilzing | 19 | -1 | 27 |
| 10 |  Buchbach | 20 | -3 | 27 |
| 11 |  Memmingen | 19 | +1 | 25 |
| 12 |  Ansbach | 19 | -8 | 23 |
| 13 |  Bayreuth | 20 | -13 | 21 |
| 14 |  Greuther Fürth II | 19 | -2 | 16 |
| 15 |  Augsburg II | 17 | -10 | 15 |
| 16 |  Viktoria Aschaffenburg | 20 | -26 | 13 |
| 17 |  Hankofen-Hailing | 19 | -26 | 13 |
| 18 |  Schwaben Augsburg | 19 | -18 | 12 |