| Pos | Team | PL | GD | PTS |
|---|---|---|---|---|
| Bayernliga North | ||||
| 1 |  ASV Neumarkt | 19 | +12 | 37 |
| 2 |  Cham | 19 | +17 | 35 |
| 3 |  Ingolstadt II | 20 | +16 | 34 |
| 4 |  Eltersdorf | 17 | +14 | 33 |
| 5 |  Eintracht Bamberg | 19 | +10 | 32 |
| 6 |  Fortuna Regensburg | 19 | +9 | 29 |
| 7 |  ATSV Erlangen | 19 | -4 | 29 |
| 8 |  Stadeln | 19 | 0 | 28 |
| 9 |  Bayern Hof | 18 | +5 | 26 |
| 10 |  Neudrossenfeld | 19 | -6 | 26 |
| 11 |  Gebenbach | 17 | -6 | 24 |
| 12 |  Kornburg | 19 | +1 | 23 |
| 13 |  Weiden | 18 | +2 | 21 |
| 14 |  Jahn Regensburg II | 19 | +1 | 21 |
| 15 |  Coburg | 18 | -27 | 17 |
| 16 |  Würzburger FV | 18 | -28 | 12 |
| 17 |  Großschwarzenlohe | 19 | -16 | 11 |
| Bayernliga Nord | ||||
| 1 | ASV Neumarkt | 19 | +12 | 37 |
| 2 | Eltersdorf | 18 | +17 | 36 |
| 3 | Ingolstadt II | 20 | +16 | 34 |
| 4 | Cham | 18 | +13 | 32 |
| 5 | Eintracht Bamberg | 19 | +10 | 32 |
| 6 | Fortuna Regensburg | 19 | +9 | 29 |
| 7 | ATSV Erlangen | 18 | -6 | 28 |
| 8 | Stadeln | 19 | 0 | 28 |
| 9 | Bayern Hof | 19 | +3 | 26 |
| 10 | Neudrossenfeld | 19 | -6 | 26 |
| 11 | Gebenbach | 18 | -5 | 25 |
| 12 | Kornburg | 19 | +1 | 23 |
| 13 | Jahn Regensburg II | 20 | -1 | 22 |
| 14 | Weiden | 18 | +2 | 21 |
| 15 | Coburg | 18 | -27 | 17 |
| 16 | Würzburger FV | 18 | -22 | 14 |
| 17 | Großschwarzenlohe | 19 | -16 | 11 |